I have the same issue. I am seeing more than one culprit though. The control rods can rattle as well as the glass
I am going to replace all I can.
there are door control rod anti rattle rubber bushings and window glass anti rattle cushions.
you can get them at Corvette Central or I believe Ecklers
It looks like you will have to remove the door panels
If this will help here are two pictures showing the glass cushions and control rod grommets two cushions at top of door

two grommets on control rods
|UPDATED|6/19/2012 12:44:29 PM (AZT)|/UPDATED|
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It has been over a year since I started. I had to quit the project so
the car just sat in the garage. I was able to get started again in May 2012. As of July 27 2012 I have done the fiberglass repairs and applied Slick Sand High Build Primer.

https://www.c3vr.com/member_uploads/14401_14500/14470/Doors-off-(Copy)201261111476r.jpg